7. Credits¶
The paper for spectre is currently being prepared. If you use spectre in your work and wish to publish in the meantime please refer the project’s web page: https://github.com/maplesond/spectre.git
Additionally, spectre consists on a number of tools that have already been published, if your work uses any of these pre-published tools please also cite the associated publication(s). A reverse chronological list of all publications related to tools now built into spectre are in the table below.
- FlatNJ
- Monika Balvociute, Andreas Spillner and Vincent Moulton, 2014. FlatNJ: A novel network-based approach to visualize evolutionary and biogeographical relationships. Systematic Biology.
- SuperQ
- Stefan Grunewald, Andreas Spillner, Sarah Bastkowski, Anja Bogershausen and Vincent Moulton, 2013. SuperQ: computing supernetworks from quartets. EE/ACM Transactions on Computational Biology and Bioinformatics.
- NetME
- Sarah Bastkowski, Andreas Spillner and Vincent Moulton, 2013. Fishing for minimum evolution trees with Neighbor-Nets. Information Processing Letters.
- NetMake
- Dan Levy and Lior Pachter, 2010. The Neighbor-Net Algorithm. Advances in Applied Mathematics.
- QNet
- Stefan Grünewald, Kristoffer Forslund, Andreas Dress and Vincent Moulton, 2006 QNet: An Agglomerative Method for the Construction of Phylogenetic Networks from Weighted Quartets Molecular Biology and Evolution Volume 24, Issue 2
SPECTRE is an international collaboration. Active contributors to spectre are listed in the following table (in publication order):
| Name | Current Institute | Contribution | |
|---|---|---|---|
| Daniel Mapleson | daniel.mapleson@earlham.ac.uk | Earlham Institute (EI) | General software development, testing, optimisation and codebase management |
| Sarah Bastkowski | sarah.bastkowski@earlham.ac.uk | Earlham Institute (EI) | SuperQ, NetMake, NetME, NeighborNet Implementation, Algorithms, Optimisers |
| Monica Balvociute | ??? | University of Otago | FlatNJ, NetView |
| Andreas Spilner | anspillner@gmail.com | NA | Mathematics, Algorithms, Optimisers, SPECTRE development |
| Taoyang Wu | taoyang.wu@gmail.com | University of East Anglia (UEA) | Mathematics, Testing |
| Vincent Moulton | vincent.moulton@cmp.uea.ac.uk | University of East Anglia (UEA) | Mathematics, Algorithms |
In addition, the people that contributed to the original tools which are now contained within spectre are listed in the following table (in alphabetical order):
| Name | Contribution |
|---|---|
| Anja Boegershausen | SuperQ |
| Kristoffer Forslund | QNet |
| Stephan Gruenewald | QNet, SuperQ |
